Cyclin-dependent kinase 2
Also known as: CDK2, CDKN2
Function
Serine/threonine-protein kinase involved in the control of the cell cycle; essential for meiosis, but dispensable for mitosis. Phosphorylates CABLES1, CTNNB1, CDK2AP2, ERCC6, NBN, USP37, p53/TP53, NPM1, CDK7, RB1, BRCA2, MYC, NPAT, SUV39H1, EZH2. Triggers duplication of centrosomes and DNA. Acts at the G1-S transition to promote the E2F transcriptional program and the initiation of DNA synthesis, and modulates G2 progression; controls the timing of entry into mitosis/meiosis by controlling the subsequent activation of cyclin B/CDK1 by phosphorylation, and coordinates the activation of cyclin B/CDK1 at the centrosome and in the nucleus. Crucial role in orchestrating a fine balance between cellular proliferation, cell death, and DNA repair in embryonic stem cells (ESCs). Activated by the CDK-activating kinase (CAK) complex consisting of CDK7, cyclin-H/CCNH and MAT1, which is a master regulator of CDK activity. Activity of CDK2 is maximal during S phase and G2; activated by interaction with cyclin E during the early stages of DNA synthesis to permit G1-S transition, and subsequently activated by cyclin A2 (cyclin A1 in germ cells) during the late stages of DNA replication to drive the transition from S phase to mitosis, the G2 phase. EZH2 phosphorylation promotes H3K27me3 maintenance and epigenetic gene silencing. Cyclin E/CDK2 prevents oxidative stress-mediated Ras-induced senescence by phosphorylating MYC. Involved in G1-S phase DNA damage checkpoint that prevents cells with damaged DNA from initiating mitosis; regulates homologous recombination-dependent repair by phosphorylating BRCA2, this phosphorylation is low in S phase when recombination is active, but increases as cells progress towards mitosis. In response to DNA damage, double-strand break repair by homologous recombination a reduction of CDK2-mediated BRCA2 phosphorylation. Involved in regulation of telomere repair by mediating phosphorylation of NBN. Phosphorylation of RB1 disturbs its interaction with E2F1. NPM1 phosphorylation by cyclin E/CDK2 promotes its dissociates from unduplicated centrosomes, thus initiating centrosome duplication. Cyclin E/CDK2-mediated phosphorylation of NPAT at G1-S transition and until prophase stimulates the NPAT-mediated activation of histone gene transcription during S phase. Required for vitamin D-mediated growth inhibition by being itself inactivated. Involved in the nitric oxide- (NO) mediated signaling in a nitrosylation/activation-dependent manner. USP37 is activated by phosphorylation and thus triggers G1-S transition. CTNNB1 phosphorylation regulates insulin internalization. Phosphorylates FOXP3 and negatively regulates its transcriptional activity and protein stability (By similarity). Phosphorylates ERCC6 which is essential for its chromatin remodeling activity at DNA double-strand breaks. Acts as a regulator of the phosphatidylinositol 3-kinase/protein kinase B signal transduction by mediating phosphorylation of the C-terminus of protein kinase B (PKB/AKT1 and PKB/AKT2), promoting its activation.
Classification
- Family (Pfam)
- PF00069 Pkinase
- InterPro
- CDK, Kinase-like_dom_sf, Prot_kinase_dom, Protein_kinase_ATP_BS, Ser/Thr_kinase_AS
- Functional cluster
- Serine/Threonine Protein Kinases
Experimental structures · PDB · 512
- 1AQ1 X-ray 2.00A
- 1B38 X-ray 2.00A
- 1B39 X-ray 2.10A
- 1BUH X-ray 2.60A
- 1CKP X-ray 2.05A
- 1DI8 X-ray 2.20A
- 1DM2 X-ray 2.10A
- 1E1V X-ray 1.95A
- 1E1X X-ray 1.85A
- 1E9H X-ray 2.50A
- 1F5Q X-ray 2.50A
- 1FIN X-ray 2.30A
- … and 500 more
A predicted model is available from AlphaFold.
Gene Ontology · 52
- GO:0015030 Cajal body
- GO:0005813 centrosome
- GO:0000781 chromosome, telomeric region
- GO:0036064 ciliary basal body
- GO:0000793 condensed chromosome
- GO:0097123 cyclin A1-CDK2 complex
- GO:0097124 cyclin A2-CDK2 complex
- GO:0097134 cyclin E1-CDK2 complex
- GO:0097135 cyclin E2-CDK2 complex
- GO:0000307 cyclin-dependent protein kinase holoenzyme complex
- GO:0005737 cytoplasm
- GO:0005829 cytosol
- GO:0005768 endosome
- GO:0005635 nuclear envelope
- GO:0005654 nucleoplasm
- GO:0005634 nucleus
- GO:0005667 transcription regulator complex
- GO:0000805 X chromosome
- GO:0000806 Y chromosome
- GO:0005524 ATP binding
- GO:0030332 cyclin binding
- GO:0097472 cyclin-dependent protein kinase activity
- GO:0004693 cyclin-dependent protein serine/threonine kinase activity
- GO:0000287 magnesium ion binding
- GO:0019904 protein domain specific binding
- GO:0106310 protein serine kinase activity
- GO:0004674 protein serine/threonine kinase activity
- GO:0051301 cell division
- GO:0071732 cellular response to nitric oxide
- GO:0090398 cellular senescence
- GO:0007099 centriole replication
- GO:0051298 centrosome duplication
- GO:0006338 chromatin remodeling
- GO:0006281 DNA repair
- GO:0006260 DNA replication
- GO:0000082 G1/S transition of mitotic cell cycle
- GO:0000086 G2/M transition of mitotic cell cycle
- GO:0051321 meiotic cell cycle
- GO:0031571 mitotic G1 DNA damage checkpoint signaling
- GO:0120186 negative regulation of protein localization to chromatin
- GO:0018105 peptidyl-serine phosphorylation
- GO:0008284 positive regulation of cell population proliferation
- GO:0045740 positive regulation of DNA replication
- GO:0031453 positive regulation of heterochromatin formation
- GO:0043687 post-translational protein modification
- GO:0006468 protein phosphorylation
- GO:0007265 Ras protein signal transduction
- GO:1905784 regulation of anaphase-promoting complex-dependent catabolic process
- GO:0120261 regulation of heterochromatin organization
- GO:0007346 regulation of mitotic cell cycle
- GO:0007165 signal transduction
- GO:0043247 telomere maintenance in response to DNA damage
Drugs targeting this protein · 15
- PHA-793887 inhibitor
- SELICICLIB inhibitor
- ZOTIRACICLIB inhibitor
- DINACICLIB inhibitor
- SU-9516 inhibitor
- BMS-387032 inhibitor
- RGB-286638 inhibitor
- AG-24322 inhibitor
- RG-547 inhibitor
- ALVOCIDIB inhibitor
- RONICICLIB inhibitor
- AT-7519 inhibitor
- AZD-5438 inhibitor
- MILCICLIB inhibitor
- UCN-01 inhibitor
Neighborhood · nearest proteins
Related proteins · sequence + function similarity
- Cyclin-dependent kinase 2 1.00
- Cyclin-dependent kinase 2 1.00
- Cyclin-dependent kinase 2 1.00
- Cyclin-dependent kinase 2 1.00
- Cyclin-dependent kinase 2 0.99
- Cyclin-dependent kinase 2 0.98
- Cyclin-dependent kinase 3 0.97
- Cell division control protein 2 homolog 0.96
- Cyclin-dependent kinase 3 0.95
- Cyclin-dependent kinase A-1 0.95
- Cell division control protein 2 homolog 0.95
- Cell division control protein 2 homolog 0.95
Co-cited proteins · studied together in the literature
- Speedy protein A 5 shared papers
- CDK2-associated and cullin domain-containing protein 1 1 shared papers
- Cyclin-A2 5 shared papers
- Cyclin-dependent kinase 20 1 shared papers
- Cyclin-dependent kinases regulatory subunit 1 1 shared papers
- Cyclin-dependent kinase 2-associated protein 2 1 shared papers
- Cyclin-dependent kinase 7 5 shared papers
- Protein NPAT 2 shared papers
- G2/mitotic-specific cyclin-B3 1 shared papers
- G2/mitotic-specific cyclin-B3 1 shared papers
- Cyclin-dependent kinase 1 7 shared papers
- Myc proto-oncogene protein 2 shared papers
Literature · 74 cited papers
- Structural basis of T-loop-independent recognition and activation of CDKs by the CDK-activating kinase. Science · 2025
- ATM and CDK2 control chromatin remodeler CSB to inhibit RIF1 in DSB repair pathway choice. Nat. Commun. · 2017
- Structural basis of divergent cyclin-dependent kinase activation by Spy1/RINGO proteins. EMBO J. · 2017
- NBS1 phosphorylation status dictates repair choice of dysfunctional telomeres. Mol. Cell · 2017
- CDK2-dependent phosphorylation of Suv39H1 is involved in control of heterochromatin replication during cell cycle progression. Nucleic Acids Res. · 2014
- Cell-cycle-regulated activation of Akt kinase by phosphorylation at its carboxyl terminus. Nature · 2014
- Overexpression of DOC-1R inhibits cell cycle G1/S transition by repressing CDK2 expression and activation. Int. J. Biol. Sci. · 2013
- A role for the Ankyrin repeat containing protein Ankrd17 in Nod1- and Nod2-mediated inflammatory responses. FEBS Lett. · 2013
- N-terminal acetylome analyses and functional insights of the N-terminal acetyltransferase NatB. Proc. Natl. Acad. Sci. U.S.A. · 2012
- Discovery of a novel class of 2-aminopyrimidines as CDK1 and CDK2 inhibitors. Bioorg. Med. Chem. Lett. · 2011
- Deubiquitinase USP37 is activated by CDK2 to antagonize APC(CDH1) and promote S phase entry. Mol. Cell · 2011
- Briefly bound to activate: transient binding of a second catalytic magnesium activates the structure and dynamics of CDK2 kinase for catalysis. Structure · 2011
- … and 62 more in the literature graph