NACHT, LRR and PYD domains-containing protein 3
Also known as: C1orf7, CIAS1, NALP3, NLRP3, PYPAF1
Function
Sensor component of the NLRP3 inflammasome, which mediates inflammasome activation in response to defects in membrane integrity, leading to secretion of inflammatory cytokines IL1B and IL18 and pyroptosis. In response to pathogens and other damage-associated signals that affect the integrity of membranes, initiates the formation of the inflammasome polymeric complex composed of NLRP3, CASP1 and PYCARD/ASC. Recruitment of pro-caspase-1 (proCASP1) to the NLRP3 inflammasome promotes caspase-1 (CASP1) activation, which subsequently cleaves and activates inflammatory cytokines IL1B and IL18 and gasdermin-D (GSDMD), promoting cytokine secretion and pyroptosis. Activation of NLRP3 inflammasome is also required for HMGB1 secretion; stimulating inflammatory responses. Involved in the homeostatic wound healing response to tissue injury, a multistep cascade that guides neutrophil migration to necrotic sites while avoiding collateral damage of healthy tissues. ATP released from necrotic cells triggers activation of NLRP3 inflammasome through P2RX7 signaling leading to neutrophil adhesion to the vascular endothelium close to the injury site (By similarity). Under resting conditions, ADP-bound NLRP3 is autoinhibited. NLRP3 activation stimuli include extracellular ATP, nigericin, reactive oxygen species, crystals of monosodium urate or cholesterol, amyloid-beta fibers, environmental or industrial particles and nanoparticles, such as asbestos, silica, aluminum salts, cytosolic dsRNA, etc. Almost all stimuli trigger intracellular K(+) efflux (By similarity). These stimuli lead to membrane perturbation and activation of NLRP3 (By similarity). Upon activation, NLRP3 is transported to microtubule organizing center (MTOC), where it is unlocked by NEK7, leading to its relocalization to dispersed trans-Golgi network (dTGN) vesicle membranes and formation of an active inflammasome complex. Associates with dTGN vesicle membranes by binding to phosphatidylinositol 4-phosphate (PtdIns4P). Shows ATPase activity.
Classification
- Family (Pfam)
- PF14484 FISNA, PF13516 LRR_6, PF05729 NACHT, PF17776 NLRC4_HD2, PF02758 PYRIN, PF17779 WHD_NOD2
- InterPro
- DAPIN, DEATH-like_dom_sf, Leu-rich_rpt, LRR_dom_sf, NACHT-assoc, NACHT_NTPase, NLRP_HD2, NLRP_innate_immun_reg, NOD1/2_WH, P-loop_NTPase
- Functional cluster
- Immunoglobulin & Immune-Response Proteins
Experimental structures · PDB · 23
- 2NAQ NMR
- 3QF2 X-ray 1.70A
- 6NPY EM 3.80A
- 7ALV X-ray 2.83A
- 7PZC EM 3.90A
- 7PZD EM 3.60A
- 7VTP EM 3.23A
- 7ZGU EM 3.40A
- 8EJ4 EM 3.40A
- 8ERT EM 3.30A
- 8ETR EM 3.50A
- 8RI2 X-ray 2.80A
- … and 11 more
A predicted model is available from AlphaFold.
Gene Ontology · 54
- GO:0005737 cytoplasm
- GO:0005829 cytosol
- GO:0005783 endoplasmic reticulum
- GO:0005576 extracellular region
- GO:0000139 Golgi membrane
- GO:0031021 interphase microtubule organizing center
- GO:0016020 membrane
- GO:0005815 microtubule organizing center
- GO:0005739 mitochondrion
- GO:0072559 NLRP3 inflammasome complex
- GO:0005634 nucleus
- GO:0043531 ADP binding
- GO:0005524 ATP binding
- GO:0016887 ATP hydrolysis activity
- GO:0140608 cysteine-type endopeptidase activator activity
- GO:0140297 DNA-binding transcription factor binding
- GO:0042802 identical protein binding
- GO:0060090 molecular adaptor activity
- GO:0140693 molecular condensate scaffold activity
- GO:0140299 molecular sensor activity
- GO:0042834 peptidoglycan binding
- GO:1901981 phosphatidylinositol phosphate binding
- GO:0070273 phosphatidylinositol-4-phosphate binding
- GO:0030674 protein-macromolecule adaptor activity
- GO:0043565 sequence-specific DNA binding
- GO:0035591 signaling adaptor activity
- GO:0006915 apoptotic process
- GO:0071222 cellular response to lipopolysaccharide
- GO:0098586 cellular response to virus
- GO:0006952 defense response
- GO:0009595 detection of biotic stimulus
- GO:0006351 DNA-templated transcription
- GO:0006954 inflammatory response
- GO:0045087 innate immune response
- GO:0002674 negative regulation of acute inflammatory response
- GO:0050728 negative regulation of inflammatory response
- GO:0032691 negative regulation of interleukin-1 beta production
- GO:1901223 negative regulation of non-canonical NF-kappaB signal transduction
- GO:0044546 NLRP3 inflammasome complex assembly
- GO:0007231 osmosensory signaling pathway
- GO:0002221 pattern recognition receptor signaling pathway
- GO:0050729 positive regulation of inflammatory response
- GO:0032731 positive regulation of interleukin-1 beta production
- GO:0032753 positive regulation of interleukin-4 production
- GO:1901224 positive regulation of non-canonical NF-kappaB signal transduction
- GO:2000553 positive regulation of T-helper 2 cell cytokine production
- GO:0045630 positive regulation of T-helper 2 cell differentiation
- GO:0045944 positive regulation of transcription by RNA polymerase II
- GO:0002830 positive regulation of type 2 immune response
- GO:0051260 protein homooligomerization
- GO:0051604 protein maturation
- GO:0070269 pyroptotic inflammatory response
- GO:0050727 regulation of inflammatory response
- GO:0007165 signal transduction
Disease associations
- familial cold autoinflammatory syndrome 1 MONDO:0007349
- keratitis fugax hereditaria MONDO:0007849
- Muckle-Wells syndrome MONDO:0008633
- CINCA syndrome MONDO:0011776
- hearing loss, autosomal dominant 34, with or without inflammation MONDO:0033261
Drugs targeting this protein · 1
- DAPANSUTRILE inhibitor
Neighborhood · nearest proteins
Related proteins · sequence + function similarity
- NACHT, LRR and PYD domains-containing protein 3 1.00
- NACHT, LRR and PYD domains-containing protein 3 0.99
- NACHT, LRR and PYD domains-containing protein 3 0.99
- NACHT, LRR and PYD domains-containing protein 3 0.99
- NACHT, LRR and PYD domains-containing protein 14 0.96
- NACHT, LRR and PYD domains-containing protein 4 0.95
- NACHT, LRR and PYD domains-containing protein 12 0.95
- NACHT, LRR and PYD domains-containing protein 9 0.94
- NACHT, LRR and PYD domains-containing protein 12 0.94
- NACHT, LRR and PYD domains-containing protein 9 0.94
- NACHT, LRR and PYD domains-containing protein 2 0.94
- NACHT, LRR and PYD domains-containing protein 13 0.94
Co-cited proteins · studied together in the literature
- NACHT, LRR and PYD domains-containing protein 3 20 shared papers
- Apoptosis-associated speck-like protein containing a CARD 10 shared papers
- Serine/threonine-protein kinase Nek7 4 shared papers
- NFX1-type zinc finger-containing protein 1 1 shared papers
- ATP-dependent RNA helicase DHX33 1 shared papers
- E3 ubiquitin-protein ligase MARCHF5 1 shared papers
- Extracellular calcium-sensing receptor 1 shared papers
- ADP-ribosylating toxin CARDS 1 shared papers
- E3 ubiquitin-protein ligase TRIM65 1 shared papers
- Pyrin domain-containing protein 5 1 shared papers
- Palmitoyltransferase ZDHHC5 1 shared papers
- Caspase recruitment domain-containing protein 8 2 shared papers
Literature · 84 cited papers
- Human cytomegalovirus protein US18 promotes NLRP3 inflammasome activation. Biochem. Biophys. Res. Commun. · 2025
- Thermal Proteome Profiling Reveals Meltome Upon NLRP3 Inflammasome Activation. Mol. Cell. Proteomics · 2025
- The human disease-associated gene ZNFX1 controls inflammation through inhibition of the NLRP3 inflammasome. EMBO J. · 2024
- ABHD8 antagonizes inflammation by facilitating chaperone-mediated autophagy-mediated degradation of NLRP3. Autophagy · 2025
- Consecutive palmitoylation and phosphorylation orchestrates NLRP3 membrane trafficking and inflammasome activation. Mol. Cell · 2024
- ZDHHC5-mediated NLRP3 palmitoylation promotes NLRP3-NEK7 interaction and inflammasome activation. Mol. Cell · 2023
- MARCH5-dependent NLRP3 ubiquitination is required for mitochondrial NLRP3-NEK7 complex formation and NLRP3 inflammasome activation. EMBO J. · 2023
- Palmitoylation prevents sustained inflammation by limiting NLRP3 inflammasome activation through chaperone-mediated autophagy. Mol. Cell · 2022
- Cryo-EM structures of the active NLRP3 inflammasome disk. Nature · 2022
- The inflammasome activity of NLRP3 is independent of NEK7 in HEK293 cells co-expressing ASC. Int. J. Mol. Sci. · 2022
- Directionality of PYD filament growth determined by the transition of NLRP3 nucleation seeds to ASC elongation. Sci. Adv. · 2022
- Structural basis for the oligomerization-mediated regulation of NLRP3 inflammasome activation. Proc. Natl. Acad. Sci. U.S.A. · 2022
- … and 72 more in the literature graph