1-phosphatidylinositol 3-phosphate 5-kinase
Also known as: KIAA0981, PIKFYVE, PIP5K3
Function
Dual specificity kinase implicated in myriad essential cellular processes such as maintenance of endomembrane homeostasis, and endocytic-vacuolar pathway, lysosomal trafficking, nuclear transport, stress- or hormone-induced signaling and cell cycle progression. The PI(3,5)P2 regulatory complex regulates both the synthesis and turnover of phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2). Sole enzyme to catalyze the phosphorylation of phosphatidylinositol 3-phosphate on the fifth hydroxyl of the myo-inositol ring, to form (PtdIns(3,5)P2). Also catalyzes the phosphorylation of phosphatidylinositol on the fifth hydroxyl of the myo-inositol ring, to form phosphatidylinositol 5-phosphate (PtdIns(5)P). Has serine-protein kinase activity and is able to autophosphorylate and transphosphorylate. Autophosphorylation inhibits its own phosphatidylinositol 3-phosphate 5-kinase activity, stimulates FIG4 lipid phosphatase activity and down-regulates lipid product formation. Involved in key endosome operations such as fission and fusion in the course of endosomal cargo transport. Required for the maturation of early into late endosomes, phagosomes and lysosomes. Regulates vacuole maturation and nutrient recovery following engulfment of macromolecules, initiates the redistribution of accumulated lysosomal contents back into the endosome network. Critical regulator of the morphology, degradative activity, and protein turnover of the endolysosomal system in macrophages and platelets (By similarity). In neutrophils, critical to perform chemotaxis, generate ROS, and undertake phagosome fusion with lysosomes. Plays a key role in the processing and presentation of antigens by major histocompatibility complex class II (MHC class II) mediated by CTSS. Regulates melanosome biogenesis by controlling the delivery of proteins from the endosomal compartment to the melanosome. Essential for systemic glucose homeostasis, mediates insulin-induced signals for endosome/actin remodeling in the course of GLUT4 translocation/glucose uptake activation (By similarity). Synthesis if (PtdIns(3,5)P2) is required for the cGAS-STING pathway. Supports microtubule-based endosome-to-trans-Golgi network cargo transport, through association with SPAG9 and RABEPK (By similarity). Mediates EGFR trafficking to the nucleus.
Classification
- Family (Pfam)
- PF00118 Cpn60_TCP1, PF00610 DEP, PF01363 FYVE, PF01504 PIP5K
- InterPro
- Cpn60/GroEL/TCP-1, DEP_dom, GroEL-like_apical_dom_sf, PIKfyve, PIKfyve_DEP, PIKfyve_PIPKc, PInositol-4-P-4/5-kinase_C_sf, PInositol-4-P-4/5-kinase_core, PInositol-4-P-5-kinase_N, TCP-1-like_intermed_sf, WH-like_DNA-bd_sf, WH_DNA-bd_sf, Znf_FYVE, Znf_FYVE-rel, Znf_FYVE_PHD, Znf_RING/FYVE/PHD
- Functional cluster
- Zinc-Finger & Chromatin Regulatory Proteins
Experimental structures · PDB · 1
- 7K2V EM 6.60A
A predicted model is available from AlphaFold.
Gene Ontology · 33
- GO:0031410 cytoplasmic vesicle
- GO:0005829 cytosol
- GO:0031901 early endosome membrane
- GO:0010008 endosome membrane
- GO:0000139 Golgi membrane
- GO:0031902 late endosome membrane
- GO:0045121 membrane raft
- GO:0030670 phagocytic vesicle membrane
- GO:0012506 vesicle membrane
- GO:0000285 1-phosphatidylinositol-3-phosphate 5-kinase activity
- GO:0016308 1-phosphatidylinositol-4-phosphate 5-kinase activity
- GO:0052810 1-phosphatidylinositol-5-kinase activity
- GO:0005524 ATP binding
- GO:0043813 phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity
- GO:0106310 protein serine kinase activity
- GO:0004674 protein serine/threonine kinase activity
- GO:0008270 zinc ion binding
- GO:1903100 1-phosphatidyl-1D-myo-inositol 3,5-bisphosphate metabolic process
- GO:0019886 antigen processing and presentation of exogenous peptide antigen via MHC class II
- GO:0035556 intracellular signal transduction
- GO:0032438 melanosome organization
- GO:0030593 neutrophil chemotaxis
- GO:0036289 peptidyl-serine autophosphorylation
- GO:0090382 phagosome maturation
- GO:0090385 phagosome-lysosome fusion
- GO:1904562 phosphatidylinositol 5-phosphate metabolic process
- GO:0006661 phosphatidylinositol biosynthetic process
- GO:0034504 protein localization to nucleus
- GO:0006612 protein targeting to membrane
- GO:0019065 receptor-mediated endocytosis of virus by host cell
- GO:2000785 regulation of autophagosome assembly
- GO:1903426 regulation of reactive oxygen species biosynthetic process
- GO:0042147 retrograde transport, endosome to Golgi
Disease associations
- fleck corneal dystrophy MONDO:0007376
Drugs targeting this protein · 2
- APILIMOD inhibitor
- APILIMOD MESYLATE inhibitor
Related proteins · sequence + function similarity
- 1-phosphatidylinositol 3-phosphate 5-kinase 0.99
- Small G protein signaling modulator 1 0.65
- Putative 1-phosphatidylinositol 3-phosphate 5-kinase 0.63
- Oxidation resistance protein 1 0.63
- Oxidation resistance protein 1 0.62
- Oxidation resistance protein 1A 0.62
- Rho guanine nucleotide exchange factor TIAM1 0.62
- Small G protein signaling modulator 1 0.61
- Rho guanine nucleotide exchange factor TIAM1 0.61
- Phosphatidate phosphatase LPIN1 0.61
- Oxidation resistance protein 1 0.60
- Protein phosphatase Slingshot homolog 2 0.60
Co-cited proteins · studied together in the literature
- 1-phosphatidylinositol 3-phosphate 5-kinase 8 shared papers
- Cathepsin S 1 shared papers
- Polyphosphoinositide phosphatase 3 shared papers
- Protein VAC14 homolog 3 shared papers
- Rab9 effector protein with kelch motifs 1 shared papers
- Rab9 effector protein with kelch motifs 1 shared papers
- Mucolipin-1 1 shared papers
- Epidermal growth factor receptor 1 shared papers
- Mucolipin-1 1 shared papers
- Procathepsin L 1 shared papers
- Two pore channel protein 2 1 shared papers
- Stimulator of interferon genes protein 1 shared papers
Literature · 28 cited papers
- PtdIns(3,5)P2 is an endogenous ligand of STING in innate immune signalling. Nature · 2026
- Insights into Lysosomal PI(3,5)P2 Homeostasis from a Structural-Biochemical Analysis of the PIKfyve Lipid Kinase Complex. Mol. Cell · 2020
- Characterization of spike glycoprotein of SARS-CoV-2 on virus entry and its immune cross-reactivity with SARS-CoV. Nat. Commun. · 2020
- The Phosphoinositide Kinase PIKfyve Promotes Cathepsin-S-Mediated Major Histocompatibility Complex Class II Antigen Presentation. IScience · 2019
- PIKfyve regulates melanosome biogenesis. PLoS Genet. · 2018
- The Lipid Kinase PIKfyve Coordinates the Neutrophil Immune Response through the Activation of the Rac GTPase. J. Immunol. · 2017
- PIKfyve Regulates Vacuole Maturation and Nutrient Recovery following Engulfment. Dev. Cell · 2016
- Toward a comprehensive characterization of a human cancer cell phosphoproteome. J. Proteome Res. · 2013
- PIKfyve and its Lipid products in health and in sickness. Curr. Top. Microbiol. Immunol. · 2012
- N-terminal acetylome analyses and functional insights of the N-terminal acetyltransferase NatB. Proc. Natl. Acad. Sci. U.S.A. · 2012
- Functional dissociation between PIKfyve-synthesized PtdIns5P and PtdIns(3,5)P2 by means of the PIKfyve inhibitor YM201636. Am. J. Physiol. · 2012
- System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation. Sci. Signal. · 2011
- … and 16 more in the literature graph