Serine/threonine-protein kinase TBK1
Also known as: NAK, TBK1
Function
Serine/threonine kinase that plays an essential role in regulating inflammatory responses to foreign agents. Following activation of toll-like receptors by viral or bacterial components, associates with TRAF3 and TANK and phosphorylates interferon regulatory factors (IRFs) IRF3 and IRF7 as well as DDX3X. This activity allows subsequent homodimerization and nuclear translocation of the IRFs leading to transcriptional activation of pro-inflammatory and antiviral genes including IFNA and IFNB. In order to establish such an antiviral state, TBK1 form several different complexes whose composition depends on the type of cell and cellular stimuli. Plays a key role in IRF3 activation: acts by first phosphorylating innate adapter proteins MAVS, STING1 and TICAM1 on their pLxIS motif, leading to recruitment of IRF3, thereby licensing IRF3 for phosphorylation by TBK1. Phosphorylated IRF3 dissociates from the adapter proteins, dimerizes, and then enters the nucleus to induce expression of interferons. Thus, several scaffolding molecules including FADD, TRADD, MAVS, AZI2, TANK or TBKBP1/SINTBAD can be recruited to the TBK1-containing-complexes. Under particular conditions, functions as a NF-kappa-B effector by phosphorylating NF-kappa-B inhibitor alpha/NFKBIA, IKBKB or RELA to translocate NF-Kappa-B to the nucleus. Restricts bacterial proliferation by phosphorylating the autophagy receptor OPTN/Optineurin on 'Ser-177', thus enhancing LC3 binding affinity and antibacterial autophagy. Phosphorylates SMCR8 component of the C9orf72-SMCR8 complex, promoting autophagosome maturation. Phosphorylates ATG8 proteins MAP1LC3C and GABARAPL2, thereby preventing their delipidation and premature removal from nascent autophagosomes. Seems to play a role in energy balance regulation by sustaining a state of chronic, low-grade inflammation in obesity, which leads to a negative impact on insulin sensitivity (By similarity). Attenuates retroviral budding by phosphorylating the endosomal sorting complex required for transport-I (ESCRT-I) subunit VPS37C. Phosphorylates Borna disease virus (BDV) P protein. Plays an essential role in the TLR3- and IFN-dependent control of herpes virus HSV-1 and HSV-2 infections in the central nervous system. Acts both as a positive and negative regulator of the mTORC1 complex, depending on the context: activates mTORC1 in response to growth factors by catalyzing phosphorylation of MTOR, while it limits the mTORC1 complex by promoting phosphorylation of RPTOR. Acts as a positive regulator of the mTORC2 complex by mediating phosphorylation of MTOR, leading to increased phosphorylation and activation of AKT1 (By similarity). Phosphorylates and activates AKT1. Involved in the regulation of TNF-induced RIPK1-mediated cell death, probably acting via CYLD phosphorylation that in turn controls RIPK1 ubiquitination status. Also participates in the differentiation of T follicular regulatory cells together with the receptor ICOS.
Classification
- Family (Pfam)
- PF00069 Pkinase, PF18394 TBK1_CCD1, PF18396 TBK1_ULD
- InterPro
- IKK, Kinase-like_dom_sf, Prot_kinase_dom, Protein_kinase_ATP_BS, TBK1_CC1, TBK1_ULD
- Functional cluster
- Viral Structural & Replication Proteins
Experimental structures · PDB · 25
- 4EFO X-ray 1.77A
- 4EUT X-ray 2.60A
- 4EUU X-ray 1.80A
- 4IM0 X-ray 2.40A
- 4IM2 X-ray 2.50A
- 4IM3 X-ray 3.34A
- 4IW0 X-ray 4.00A
- 4IWO X-ray 2.61A
- 4IWP X-ray 3.06A
- 4IWQ X-ray 3.00A
- 5EOA X-ray 2.50A
- 5EOF X-ray 2.05A
- … and 13 more
A predicted model is available from AlphaFold.
Gene Ontology · 42
- GO:0005737 cytoplasm
- GO:0005829 cytosol
- GO:0005654 nucleoplasm
- GO:0005524 ATP binding
- GO:0042802 identical protein binding
- GO:0003676 nucleic acid binding
- GO:0051219 phosphoprotein binding
- GO:0004672 protein kinase activity
- GO:0019903 protein phosphatase binding
- GO:0106310 protein serine kinase activity
- GO:0004674 protein serine/threonine kinase activity
- GO:0061629 RNA polymerase II-specific DNA-binding transcription factor binding
- GO:0002218 activation of innate immune response
- GO:0140374 antiviral innate immune response
- GO:0007249 canonical NF-kappaB signal transduction
- GO:0140896 cGAS/STING signaling pathway
- GO:0002753 cytoplasmic pattern recognition receptor signaling pathway
- GO:0051607 defense response to virus
- GO:0006954 inflammatory response
- GO:0045087 innate immune response
- GO:0016236 macroautophagy
- GO:0010629 negative regulation of gene expression
- GO:1904262 negative regulation of TORC1 signaling
- GO:0018105 peptidyl-serine phosphorylation
- GO:0018107 peptidyl-threonine phosphorylation
- GO:0010508 positive regulation of autophagy
- GO:0043123 positive regulation of canonical NF-kappaB signal transduction
- GO:0032727 positive regulation of interferon-alpha production
- GO:0032728 positive regulation of interferon-beta production
- GO:0016239 positive regulation of macroautophagy
- GO:1904263 positive regulation of TORC1 signaling
- GO:1904515 positive regulation of TORC2 signaling
- GO:0045944 positive regulation of transcription by RNA polymerase II
- GO:0032481 positive regulation of type I interferon production
- GO:0060340 positive regulation of type I interferon-mediated signaling pathway
- GO:1904417 positive regulation of xenophagy
- GO:0006468 protein phosphorylation
- GO:0032479 regulation of type I interferon production
- GO:0009615 response to virus
- GO:0061470 T follicular helper cell differentiation
- GO:0034142 toll-like receptor 4 signaling pathway
- GO:0060337 type I interferon-mediated signaling pathway
Disease associations
- glaucoma 1, open angle, P MONDO:0008328
- frontotemporal dementia and/or amyotrophic lateral sclerosis 4 MONDO:0014641
- encephalopathy, acute, infection-induced (herpes-specific), susceptibility to, 8 MONDO:0054754
- autoinflammation with arthritis and vasculitis MONDO:0971173
Neighborhood · nearest proteins
Related proteins · sequence + function similarity
- Serine/threonine-protein kinase TBK1 0.97
- Serine/threonine-protein kinase TBK1 0.95
- Inhibitor of nuclear factor kappa-B kinase subunit alpha 0.73
- Inhibitor of nuclear factor kappa-B kinase subunit alpha 0.72
- Inhibitor of nuclear factor kappa-B kinase subunit epsilon 0.72
- Inhibitor of nuclear factor kappa-B kinase subunit epsilon 0.72
- Inhibitor of nuclear factor kappa-B kinase subunit alpha 0.70
- Inhibitor of nuclear factor kappa-B kinase subunit alpha 0.69
- Inhibitor of nuclear factor kappa-B kinase subunit alpha 0.69
- Inhibitor of nuclear factor kappa-B kinase subunit alpha 0.69
- Inhibitor of nuclear factor kappa-B kinase subunit alpha 0.67
- Inhibitor of nuclear factor kappa-B kinase subunit beta 0.65
Co-cited proteins · studied together in the literature
- Ankyrin repeat and SOCS box protein 8 1 shared papers
- Non-structural protein NS-S 3 shared papers
- Inhibitor of nuclear factor kappa-B kinase subunit epsilon 11 shared papers
- E3 ubiquitin-protein ligase TRAF7 1 shared papers
- Genome polyprotein 1 shared papers
- E3 ubiquitin-protein ligase MIB1 1 shared papers
- Protein UL35 1 shared papers
- Inducible T-cell costimulator 1 shared papers
- Neurovirulence factor ICP34.5 1 shared papers
- TRAF3-interacting JNK-activating modulator 1 shared papers
- E3 ubiquitin-protein ligase RNF144B 1 shared papers
- Vacuolar protein sorting-associated protein 37C 1 shared papers
Literature · 94 cited papers
- TBK1-stabilized ZNF268a recruits SETD4 to methylate TBK1 for efficient interferon signaling. J. Biol. Chem. · 2023
- TRAF7 negatively regulates the RLR signaling pathway by facilitating the K48-linked ubiquitination of TBK1. Virol. Sin. · 2023
- Suppression of cGAS- and RIG-I-mediated innate immune signaling by Epstein-Barr virus deubiquitinase BPLF1. PLoS Pathog. · 2023
- Human TBK1 deficiency leads to autoinflammation driven by TNF-induced cell death. Cell · 2021
- SARS-CoV-2 Membrane Protein Inhibits Type I Interferon Production Through Ubiquitin-Mediated Degradation of TBK1. Front. Immunol. · 2021
- Receptor-mediated clustering of FIP200 bypasses the role of LC3 lipidation in autophagy. EMBO J. · 2020
- Evasion of Type I Interferon by SARS-CoV-2. Cell Rep. · 2020
- Inborn errors of type I IFN immunity in patients with life-threatening COVID-19. Science · 2020
- The Cytomegalovirus Tegument Protein UL35 Antagonizes Pattern Recognition Receptor-Mediated Type I IFN Transcription. Microorganisms · 2020
- Whole exome sequencing in unclassified autoinflammatory diseases: more monogenic diseases in the pipeline? Rheumatology · 2021
- TRIM14 Is a Key Regulator of the Type I IFN Response during Mycobacterium tuberculosis Infection. J. Immunol. · 2020
- TRAF3IP3 negatively regulates cytosolic RNA induced anti-viral signaling by promoting TBK1 K48 ubiquitination. Nat. Commun. · 2020
- … and 82 more in the literature graph