Histone-lysine N-methyltransferase EHMT1
Also known as: EHMT1, EUHMTASE1, GLP, KIAA1876, KMT1D
Function
Histone methyltransferase that specifically mono-, di- and trimethylates 'Lys-9' of histone H3 (H3K9me1, H3K9me2 and H3K9me3, respectively) in euchromatin. H3K9me represents a specific tag for epigenetic transcriptional repression by recruiting HP1 proteins to methylated histones. Also weakly methylates 'Lys-27' of histone H3 (H3K27me). Also required for DNA methylation, the histone methyltransferase activity is not required for DNA methylation, suggesting that these 2 activities function independently (By similarity). Probably targeted to histone H3 by different DNA-binding proteins like E2F6, MGA, MAX and/or DP1. During G0 phase, it probably contributes to silencing of MYC- and E2F-responsive genes, suggesting a role in G0/G1 transition in cell cycle. Involved in the differentiation of myoblastic precursors into brown adipose cells: following recruitment to chromatin by PRDM16, mediates formation of H3K9me2 and H3K9me3, inhibiting the expression of white adipose-selective genes (By similarity). Also involved in the differentiation of beige adipocytes from white adipose cells following recruitment by PRDM16 (By similarity). EHMT1 also promotes protein stabilization of PRDM16, by preventing PRDM16 ubiquitination and degradation (By similarity). In addition to the histone methyltransferase activity, also methylates non-histone proteins: mediates dimethylation of 'Lys-373' of p53/TP53. Represses the expression of mitochondrial function-related genes, perhaps by occupying their promoter regions, working in concert with probable chromatin reader BAZ2B (By similarity).
Classification
- Family (Pfam)
- PF12796 Ank_2, PF13637 Ank_4, PF21533 EHMT1-2_CRR, PF05033 Pre-SET, PF00856 SET
- InterPro
- Ankyrin_rpt, Ankyrin_rpt-contain_sf, EHMT1/EHMT2, EHMT_CRR, Pre-SET_dom, SET_dom, SET_dom_sf, SET_EHMT1
- Functional cluster
- Homeobox & Zinc-Finger Transcription Factors
Experimental structures · PDB · 22
- 2IGQ X-ray 2.00A
- 2RFI X-ray 1.59A
- 3B7B X-ray 2.99A
- 3B95 X-ray 2.99A
- 3FPD X-ray 2.40A
- 3HNA X-ray 1.50A
- 3MO0 X-ray 2.78A
- 3MO2 X-ray 2.49A
- 3MO5 X-ray 2.14A
- 3SW9 X-ray 3.05A
- 3SWC X-ray 2.33A
- 4I51 X-ray 1.90A
- … and 10 more
A predicted model is available from AlphaFold.
Gene Ontology · 32
- GO:0000785 chromatin
- GO:0016604 nuclear body
- GO:0005654 nucleoplasm
- GO:0005634 nucleus
- GO:0070742 C2H2 zinc finger domain binding
- GO:0046976 histone H3K27 methyltransferase activity
- GO:0140942 histone H3K9 dimethyltransferase activity
- GO:0046974 histone H3K9 methyltransferase activity
- GO:0140948 histone H3K9 monomethyltransferase activity
- GO:0140949 histone H3K9 trimethyltransferase activity
- GO:0140947 histone H3K9me2 methyltransferase activity
- GO:0008168 methyltransferase activity
- GO:0002039 p53 binding
- GO:0016279 protein-lysine N-methyltransferase activity
- GO:0001222 transcription corepressor binding
- GO:0008270 zinc ion binding
- GO:0160274 beige fat cell differentiation
- GO:0050873 brown fat cell differentiation
- GO:0006325 chromatin organization
- GO:0006346 DNA methylation-dependent constitutive heterochromatin formation
- GO:0040029 epigenetic regulation of gene expression
- GO:0140718 facultative heterochromatin formation
- GO:0045892 negative regulation of DNA-templated transcription
- GO:0051148 negative regulation of muscle cell differentiation
- GO:0000122 negative regulation of transcription by RNA polymerase II
- GO:0160275 negative regulation of white fat cell differentiation
- GO:0018027 peptidyl-lysine dimethylation
- GO:0018026 peptidyl-lysine monomethylation
- GO:0120162 positive regulation of cold-induced thermogenesis
- GO:0050821 protein stabilization
- GO:0045995 regulation of embryonic development
- GO:0060992 response to fungicide
Disease associations
- Kleefstra syndrome 1 MONDO:0027407
Neighborhood · nearest proteins
Related proteins · sequence + function similarity
- Histone-lysine N-methyltransferase EHMT1 0.97
- Histone-lysine N-methyltransferase EHMT2 0.89
- Histone-lysine N-methyltransferase EHMT2 0.84
- Zinc finger protein 516 0.79
- Zinc finger protein 217 0.77
- RE1-silencing transcription factor 0.77
- Polycomb group protein ASXL1 0.75
- PR domain zinc finger protein 2 0.75
- Inversin 0.75
- Polycomb group protein ASXL1 0.75
- Zinc finger transcription factor Trps1 0.74
- RE1-silencing transcription factor 0.74
Co-cited proteins · studied together in the literature
- Histone-lysine N-methyltransferase EHMT2 6 shared papers
- N-lysine methyltransferase SETD6 1 shared papers
- PR domain zinc finger protein 2 1 shared papers
- Protein Wiz 1 shared papers
- Histone-lysine N-methyltransferase SUV39H2 1 shared papers
- Lethal(3)malignant brain tumor-like protein 2 1 shared papers
- M-phase phosphoprotein 8 1 shared papers
- DNA (cytosine-5)-methyltransferase 3A 1 shared papers
- Histone-lysine N-methyltransferase SETDB1 2 shared papers
- Protein max 1 shared papers
- YY1-associated factor 2 1 shared papers
- Transcription factor E2F6 1 shared papers
Literature · 30 cited papers
- Site-specific mapping of the human SUMO proteome reveals co-modification with phosphorylation. Nat. Struct. Mol. Biol. · 2017
- SUMO-2 orchestrates chromatin modifiers in response to DNA damage. Cell Rep. · 2015
- System-wide analysis of SUMOylation dynamics in response to replication stress reveals novel small ubiquitin-like modified target proteins and acceptor lysines relevant for genome stability. Mol. Cell. Proteomics · 2015
- Biochemical and cellular analysis of Ogden syndrome reveals downstream Nt-acetylation defects. Hum. Mol. Genet. · 2015
- Uncovering global SUMOylation signaling networks in a site-specific manner. Nat. Struct. Mol. Biol. · 2014
- Mapping of SUMO sites and analysis of SUMOylation changes induced by external stimuli. Proc. Natl. Acad. Sci. U.S.A. · 2014
- An enzyme assisted RP-RPLC approach for in-depth analysis of human liver phosphoproteome. J. Proteomics · 2014
- Toward a comprehensive characterization of a human cancer cell phosphoproteome. J. Proteome Res. · 2013
- Structural basis of SETD6-mediated regulation of the NF-kB network via methyl-lysine signaling. Nucleic Acids Res. · 2011
- System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation. Sci. Signal. · 2011
- Initial characterization of the human central proteome. BMC Syst. Biol. · 2011
- Methyl-H3K9-binding protein MPP8 mediates E-cadherin gene silencing and promotes tumour cell motility and invasion. EMBO J. · 2010
- … and 18 more in the literature graph